Package: iNEXT 3.0.2

Anne Chao
iNEXT: Interpolation and Extrapolation for Species Diversity
Provides simple functions to compute and plot two types (sample-size- and coverage-based) rarefaction and extrapolation curves for species diversity (Hill numbers) based on individual-based abundance data or sampling-unit- based incidence data; see Chao and others (2014, Ecological Monographs) for pertinent theory and methodologies, and Hsieh, Ma and Chao (2016, Methods in Ecology and Evolution) for an introduction of the R package.
Authors:
iNEXT_3.0.2.tar.gz
iNEXT_3.0.2.zip(r-4.6)iNEXT_3.0.2.zip(r-4.5)
iNEXT_3.0.2.tgz(r-4.6-x86_64)iNEXT_3.0.2.tgz(r-4.6-arm64)iNEXT_3.0.2.tgz(r-4.5-x86_64)iNEXT_3.0.2.tgz(r-4.5-arm64)
iNEXT_3.0.2.tar.gz(r-4.6-arm64)iNEXT_3.0.2.tar.gz(r-4.6-x86_64)iNEXT_3.0.2.tar.gz(r-4.5-arm64)iNEXT_3.0.2.tar.gz(r-4.5-x86_64)
iNEXT_3.0.2.tgz(r-4.5-emscripten)
iNEXT.pdf |iNEXT.html✨
iNEXT/json (API)
NEWS
| # Install 'iNEXT' in R: |
| install.packages('iNEXT', repos = c('https://annechao.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/annechao/inext/issues
Last updated from:41a87952f6. Checks:12 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 192 | ||
| linux-devel-x86_64 | OK | 192 | ||
| source / vignettes | OK | 194 | ||
| linux-release-arm64 | OK | 188 | ||
| linux-release-x86_64 | OK | 214 | ||
| macos-devel-arm64 | OK | 171 | ||
| macos-devel-x86_64 | OK | 465 | ||
| macos-release-arm64 | OK | 136 | ||
| macos-release-x86_64 | OK | 289 | ||
| windows-devel | OK | 314 | ||
| windows-release | OK | 257 | ||
| wasm-release | OK | 122 |
Exports:as.abucountas.incfreqChaoRichnessChaoShannonChaoSimpsonDataInfoestimateDggiNEXTiNEXT
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclemagrittrplyrR6RColorBrewerRcppreshape2rlangS7scalesstringistringrvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Interpolation and extrapolation for species diversity | iNEXT-package |
| Ant data (datatype = "incidence_freq") | ant |
| Transform abundance raw data to abundance row-sum counts (iNEXT input format) | as.abucount |
| Transform incidence raw data to incidence frequencies (iNEXT input format) | as.incfreq |
| Bird data (datatype = "abundance") | bird |
| Estimation of species richness | ChaoRichness |
| Estimation of Shannon entropy/diversity | ChaoShannon |
| Estimation of Gini-Simpson index or Simpson diversity | ChaoSimpson |
| Ciliates data (datatype = "incidence_raw") | ciliates |
| Exhibit basic data information | DataInfo |
| Compute species diversity with a particular level of sample size/coverage | estimateD |
| Fortify method for classes from the iNEXT package. | fortify.iNEXT |
| ggplot2 extension for an iNEXT object | ggiNEXT ggiNEXT.default ggiNEXT.iNEXT |
| iNterpolation and EXTrapolation of Hill numbers | iNEXT |
| Plotting iNEXT object | plot.iNEXT |
| Printing iNEXT object | print.iNEXT |
| Spider data (datatype = "abundance") | spider |