Package: nichetools 0.3.3

nichetools: Complementary Package to 'nicheROVER' and 'SIBER'

Provides functions complementary to packages 'nicheROVER' and 'SIBER' allowing the user to extract Bayesian estimates from data objects created by the packages 'nicheROVER' and 'SIBER'. Please see the following publications for detailed methods on 'nicheROVER' and 'SIBER' Hansen et al. (2015) <doi:10.1890/14-0235.1>, Jackson et al. (2011) <do i:10.1111/j.1365-2656.2011.01806.x>, and Layman et al. (2007) <doi:10.1890/0012-9658(2007)88[42:CSIRPF]2.0.CO;2>, respectfully.

Authors:Benjamin L. Hlina [aut, cre]

nichetools_0.3.3.tar.gz
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nichetools_0.3.3.tgz(r-4.5-emscripten)
nichetools.pdf |nichetools.html✨
nichetools/json (API)
NEWS

# Install 'nichetools' in R:
install.packages('nichetools', repos = c('https://benjaminhlina.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/benjaminhlina/nichetools/issues

Pkgdown/docs site:https://benjaminhlina.github.io

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • mu_est_long - A 'data.frame' containing posterior estimates of mu
  • niw_fish_post - A 'list' of the posterior estimates of mu and Sigma from '{nicheROVER}'
  • over_stat - A 'data.frame' containing the estimates of percentage of overlap among groups
  • post_sam_siber - A 'list' of the posterior estimates of mu and Sigma from '{SIBER}'
  • sigma_est_wide - A 'data.frame' containing posterior estimates of Sigma

On CRAN:

Conda:

jagscpp

5.41 score 2 stars 16 scripts 662 downloads 9 exports 52 dependencies

Last updated from:ad51e49f64. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK222
source / vignettesOK284
linux-release-x86_64OK235
macos-release-arm64OK141
macos-oldrel-arm64OK127
windows-develOK173
windows-releaseOK203
windows-oldrelOK180
wasm-releaseOK132

Exports:create_comparisonsextract_group_metricsextract_laymanextract_muextract_niche_sizeextract_overlapextract_sigmaextract_similaritiesniche_ellipse

Dependencies:ashclicodacpp11dplyrellipsefarverFNNgenericsggplot2gluegtablehdrcdeisobandkernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrMatrixmclustmgcvmnormtmulticoolmvtnormnicheROVERnlmepillarpkgconfigpracmapurrrR6RColorBrewerRcpprjagsrlangS7scalesSIBERspatstat.utilsstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

Using {nichetools} with nicheROVER

Benjamin L. Hlina

Rendered fromusing-nichetools-with-the-package-nicheROVER.Rmdusingknitr::rmarkdownon Apr 13 2026.

Last update: 2024-09-30
Started: 2024-05-31

Using {nichetools} with SIBER

Benjamin L. Hlina

Rendered fromusing-nichetools-with-the-package-SIBER.Rmdusingknitr::rmarkdownon Apr 13 2026.

Last update: 2024-09-30
Started: 2024-07-17