Department of Plant Biotechnology and Bioinformatics

Journal Article
open access

Shedding light on plant proteolysis: genetically encoded fluorescent sensors as tools for profiling protease activities

Álvaro Daniel Fernández Fernández, Simon Tack (UGent) , Matthias Van Durme (UGent) , Eugenia Pitsili (UGent) , Jingjing Huang (UGent) , Jonah Nolf (UGent) , Rosa López García, Robin Pottie (UGent) , Moritz Nowack (UGent) , Jens Staal (UGent) , et al.

(2026) The Plant Cell.

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Mechanistic insight into clathrin-mediated endocytosis in plants

Tingyu Zhu (UGent) , Ive De Smet (UGent) and Daniël Van Damme (UGent)

(2026) TRAFFIC. 27(2).

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Journal Article
A2
open access

White paper : standards for handling and analyzing plant pan-genomes

Marc C. Heuermann, Pedro Barros, Sebastian Beier, Heidrun Gundlach, Jorge Alvarez-Jarreta, Keywan Hassani-Pak, Patrick König, Anne Fiebig, Tim Godec, Kristina Gruden, et al.

(2026) F1000RESEARCH. 14.

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Identification of small-molecule autophagy activators via GFP-LC3 high-throughput screening and a cargo-based autophagy flux and processing assay

Freke Mertens, Farnaz Sedigheh Takhsha, Melissa Lallier, Nikolai Engedal, Vera Goossens (UGent) , Dominique Audenaert (UGent) , Pieter-Jan Guns, Lynn Roth, Peter Vandenabeele (UGent) , Erik Fransen, et al.

(2026) EUROPEAN JOURNAL OF PHARMACOLOGY. 1026.

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PhD Thesis

Engineering triterpenoid saponin biosynthesis and investigating the functional roles of rhizogenic Agrobacterium T-DNA ORFs in hairy root induction

Tongtong Qu (UGent)

(2026)

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Journal Article
A1
open access

Somatic genome‐doubling is the most parsimonious route to allopolyploidy

Robin Burns, Alison Dawn Scott and Polina Novikova (UGent)

(2026) NEW PHYTOLOGIST. 250(5). p.2845-2851

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Wounding activates the HSFA1 transcription factors to promote cellular reprogramming in Arabidopsis

Duncan Coleman (UGent) , Akira Iwase, Ayako Kawamura, Arika Takebayashi, Yu Chen, Max Minne, Katja E Jager, Maolin Peng, Yutaka Kodama, David S Favero, et al.

(2026) PLANT CELL.

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Journal Article
A1
open access

Ancestral and divergent roles of the Marchantia polymorpha ATR kinase in maintaining genome integrity and clonal fitness

Qian-Qian Li (UGent) , Huiying Li (UGent) , Jolien De Moor (UGent) , Irene Sbrocca, Yanli Xiang (UGent) , Shao-Li Yang (UGent) , Zhi-Yi Jiang, Lin He, Jia-Yang Wang, Josephine Herbst (UGent) , et al.

(2026) PLANT CELL.

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Journal Article
A1
open access

Root hair lifespan is antagonistically controlled by autophagy and programmed cell death

Qiang-Nan Feng (UGent) , Shihao Zhu, Xinchao Wang, Yujie Liu, Jierui Zhao, Yasin Dagdas and Moritz Nowack (UGent)

(2026) NATURE PLANTS. 12(5). p.1022-1033

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Miscellaneous

Practical lessons from microbiome citizen-science projects

Sarah Lebeer and Sofie Goormachtig (UGent)

(2026) NATURE MICROBIOLOGY. 11(6). p.1474-1476

Academic Bibliography

Department of Plant Biotechnology and Bioinformatics

Shedding light on plant proteolysis: genetically encoded fluorescent sensors as tools for profiling protease activities

Mechanistic insight into clathrin-mediated endocytosis in plants

White paper : standards for handling and analyzing plant pan-genomes

Identification of small-molecule autophagy activators via GFP-LC3 high-throughput screening and a cargo-based autophagy flux and processing assay

Engineering triterpenoid saponin biosynthesis and investigating the functional roles of rhizogenic Agrobacterium T-DNA ORFs in hairy root induction

Somatic genome‐doubling is the most parsimonious route to allopolyploidy

Wounding activates the HSFA1 transcription factors to promote cellular reprogramming in Arabidopsis

Ancestral and divergent roles of the Marchantia polymorpha ATR kinase in maintaining genome integrity and clonal fitness

Root hair lifespan is antagonistically controlled by autophagy and programmed cell death

Practical lessons from microbiome citizen-science projects

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