Package: gDR 1.9.1

Arkadiusz Gladki

gDR: Umbrella package for R packages in the gDR suite

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Authors:Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

gDR_1.9.1.tar.gz
gDR_1.9.1.zip(r-4.6)gDR_1.9.1.zip(r-4.5)
gDR_1.9.1.tgz(r-4.6-any)gDR_1.9.1.tgz(r-4.5-any)
gDR_1.9.1.tar.gz(r-4.6-any)gDR_1.9.1.tar.gz(r-4.5-any)
gDR_1.9.1.tgz(r-4.5-emscripten)
gDR.pdf |gDR.html✨
gDR/json (API)
NEWS

# Install 'gDR' in R:
install.packages('gDR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gdrplatform/gdr/issues

Pkgdown/docs site:https://gdrplatform.github.io

Datasets:
  • small_combo_data - Small data.table with raw combo data used for processing via gDR
  • small_data - Small data.table with raw data used for processing via gDR

On BioConductor:gDR-1.9.1(bioc 3.23)gDR-1.8.0(bioc 3.22)

softwaredataimportshinyapps

5.43 score 2 stars 9 scripts 244 downloads 1 exports 203 dependencies

Last updated from:9871bb8b27. Checks:1 NOTE, 6 OK, 2 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE213
linux-devel-x86_64OK358
source / vignettesOK295
linux-release-x86_64OK319
macos-devel-arm64OK238
macos-release-arm64OK228
windows-develFAIL120
windows-releaseFAIL96
wasm-releaseOK187

Exports:import_data

Dependencies:abindassertthatbackportsbase64encbenchBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelbitbit64bitopsbootbroombslibBumpyMatrixcachemcarcarDatacaToolscelestialcellrangercheckmateclicliprclustercodetoolscolorspacecommonmarkcoopCoreGxcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydownloaderdplyrdrcDTevaluatefarverfastmapfastmatchfgseafontawesomeforcatsforecastforeignformatRFormulafracdifffsfutile.loggerfutile.optionsgDRcoregDRimportgDRutilsgenericsGenomicRangesggplot2gluegplotsgtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttpuvigraphIRangesisobandjquerylibjsonlitejsonvalidateKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalme4lmtestlsamagicaxismagrittrmapprojmapsmarrayMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompMultiAssayExperimentmvtnormNISTunitsnlmenloptrnnetnumDerivopenxlsxotelpbkrtestPharmacoGxpianopillarpkgconfigplotrixplyrpracmaprettyunitsprofmemprogresspromisespurrrqsquantregR.methodsS3R.ooR.utilsR6RANNrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreadxlreformulasrelationsrematchreshape2riorlangrmarkdownS4ArraysS4VectorsS7sandwichsassscalesSeqinfosetsshinyshinydashboardshinyjsslamsmsnowSnowballCsourcetoolsSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalTH.datatibbletidyrtidyselecttimeDatetinytextzdburcautf8V8vctrsviridisLitevisNetworkvroomwithrwritexlxfunXMLxtableXVectoryamlzipzoo

gDR suite

gDR team

Rendered fromgDR.Rmdusingknitr::rmarkdownon Mar 23 2026.

Last update: 2024-01-19
Started: 2021-03-03