Package: TBEST 5.2

TBEST: Tree Branches Evaluated Statistically for Tightness

Our method introduces mathematically well-defined measures for tightness of branches in a hierarchical tree. Statistical significance of the findings is determined, for all branches of the tree, by performing permutation tests, optionally with generalized Pareto p-value estimation.

Authors:Guoli Sun, Alex Krasnitz

TBEST_5.2.tar.gz
TBEST_5.2.zip(r-4.6)TBEST_5.2.zip(r-4.5)
TBEST_5.2.tgz(r-4.6-any)TBEST_5.2.tgz(r-4.5-any)
TBEST_5.2.tar.gz(r-4.6-any)TBEST_5.2.tar.gz(r-4.5-any)
TBEST_5.2.tgz(r-4.5-emscripten)
TBEST.pdf |TBEST.html
TBEST/json (API)

# Install 'TBEST' in R:
install.packages('TBEST', repos = c('https://gsun2018.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • T10 - Breast tumor single cells data
  • leukemia - Leukemia data

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.30 score 8 scripts 191 downloads 2 mentions 4 exports 3 dependencies

Last updated from:448b143890. Checks:8 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK109
source / vignettesOK136
linux-release-x86_64OK91
macos-devel-arm64OK99
macos-release-arm64OK73
windows-develOK67
windows-releaseOK56
wasm-releaseOK95

Exports:LeafContentPartitionTreeplot.bestSigTree

Dependencies:fdrtoolMASSsignal