Package: fossilbrush 1.0.5

fossilbrush: Automated Cleaning of Fossil Occurrence Data

Functions to automate the detection and resolution of taxonomic and stratigraphic errors in fossil occurrence datasets. Functions were developed using data from the Paleobiology Database.

Authors:Joe Flannery-Sutherland [aut, cre], Nussaïbah Raja-Schoob [aut, ctb], Ádam Kocsis [aut, ctb], Wolfgang Kiessling [aut]

fossilbrush_1.0.5.tar.gz
fossilbrush_1.0.5.zip(r-4.6)fossilbrush_1.0.5.zip(r-4.5)
fossilbrush_1.0.5.tgz(r-4.6-any)fossilbrush_1.0.5.tgz(r-4.5-any)
fossilbrush_1.0.5.tar.gz(r-4.6-any)fossilbrush_1.0.5.tar.gz(r-4.5-any)
fossilbrush_1.0.5.tgz(r-4.5-emscripten)
fossilbrush.pdf |fossilbrush.html✨
fossilbrush/json (API)

# Install 'fossilbrush' in R:
install.packages('fossilbrush', repos = c('https://jf15558.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jf15558/fossilbrush/issues

Datasets:

On CRAN:

Conda:

4.04 score 22 scripts 209 downloads 20 exports 17 dependencies

Last updated from:15c73aeb2b. Checks:8 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK172
source / vignettesOK312
linux-release-x86_64OK156
macos-devel-arm64OK168
macos-release-arm64OK203
windows-develOK130
windows-releaseOK246
wasm-releaseOK118

Exports:add_itpadd_kingdomsage_rangescheck_taxonomychrono_scaleclean_namedensifydiscrete_ranksfind_duplicatesfind_peaksflag_rangesformat_checkintersect_rangespacmacro_rangesplot_dprofileplot_taxaresolve_duplicatesrevise_rangesspell_checkthreshold_ranges

Dependencies:clicpp11curldata.tableglueigraphlatticelifecyclemagrittrMatrixpbapplypkgconfigrlangstringdiststringistringrvctrs

Introduction to fossilbrush (v1.0.3), an R package for automated cleaning and error flagging of fossil occurrence data

Joe Flannery Sutherland

Rendered fromfossilbrush_vignette.Rmdusingknitr::rmarkdownon Mar 30 2026.

Last update: 2024-01-23
Started: 2022-03-17

Readme and manuals

Help Manual

Help pageTopics
add_itpadd_itp
add_kingdomsadd_kingdoms
roxygen documentationage_ranges
assess_duplicatesassess_duplicates
brachiosbrachios
check_taxonomycheck_taxonomy
chrono_scalechrono_scale
roxygen documentationclean_name
densifydensify
roxygen documentationdiscrete_ranks
find_duplicatesfind_duplicates
find_peaksfind_peaks
flag_rangesflag_ranges
format_checkformat_check
geog_lookupgeog_lookup
get_pbdbget_pbdb
GTS_2020GTS_2020
GTS_2020_changelogGTS_2020_changelog
intersect_rangesintersect_ranges
pacmacro_rangespacmacro_ranges
geog_lookuppbdb_fields
pbdb_kingdomspbdb_kingdoms
plot_dprofileplot_dprofile
plot_taxaplot_taxa
quantile_coef_density_BMSquantile_coef_density_BMS
resolve_duplicatesresolve_duplicates
revise_rangesrevise_ranges
sep_codesep_code
sepkoskisepkoski
spell_checkspell_check
tgraphtgraph
threshold_peaksthreshold_peaks
threshold_rangesthreshold_ranges
update_graphupdate_graph