Package: countprop 1.1.1
countprop: Calculate Model-Based Metrics of Proportionality on Count-Based Compositional Data
Calculates metrics of proportionality using the logit-normal multinomial model. It can also provide empirical and plugin estimates of these metrics.
Authors:
countprop_1.1.1.tar.gz
countprop_1.1.1.zip(r-4.6)countprop_1.1.1.zip(r-4.5)
countprop_1.1.1.tgz(r-4.6-any)countprop_1.1.1.tgz(r-4.5-any)
countprop_1.1.1.tar.gz(r-4.6-any)countprop_1.1.1.tar.gz(r-4.5-any)
countprop_1.1.1.tgz(r-4.5-emscripten)
countprop.pdf |countprop.html✨
countprop/json (API)
NEWS
| # Install 'countprop' in R: |
| install.packages('countprop', repos = c('https://kevinmcgregor.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/kevinmcgregor/countprop/issues
- singlecell - Single cell sequencing data from mouse embryonic stem cells in G1 phase
Last updated from:345ac1d1eb. Checks:6 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 130 | ||
| source / vignettes | OK | 188 | ||
| linux-release-x86_64 | NOTE | 126 | ||
| macos-devel-arm64 | NOTE | 127 | ||
| macos-release-arm64 | NOTE | 199 | ||
| windows-devel | NOTE | 143 | ||
| windows-release | NOTE | 97 | ||
| wasm-release | OK | 103 |
Exports:convertSigmaebicebicPlotlogitNormalVariationlogLiklogVarTaylorFullmleLRmlePathnaiveVariationpluginVariation
Dependencies:bayesmcompositionsDEoptimRglassolatticeMASSMatrixRcppRcppArmadillorobustbasesurvivaltensorAtruncnormzCompositions
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Convert between CLR and ALR covariance matrices | convertSigma |
| Extended Bayesian Information Criterion | ebic |
| Extended Bayesian Information Criterion Plot | ebicPlot |
| Logit Normal Variation | logitNormalVariation |
| Log-Likelihood | logLik |
| Full logp Variance-Covariance | logVarTaylorFull |
| Maximum Likelihood Estimate for multinomial logit-normal model | mleLR |
| Maximum Likelihood Estimator Paths | mlePath |
| Naive (Empirical) Variation | naiveVariation |
| Plugin Variation (Deprecated) | pluginVariation |
| Single cell sequencing data from mouse embryonic stem cells in G1 phase | singlecell |
