Package: BioMonTools 1.2.4.9012
BioMonTools: Biomonitoring and Bioassessment Calculations
An aid for manipulating data associated with biomonitoring and bioassessment. Calculations include metric calculation, marking of excluded taxa, subsampling, and multimetric index calculation. Targeted communities are benthic macroinvertebrates, fish, periphyton, and coral. As described in the Revised Rapid Bioassessment Protocols (Barbour et al. 1999) <https://archive.epa.gov/water/archive/web/html/index-14.html>.
Authors:
BioMonTools_1.2.4.9012.tar.gz
BioMonTools_1.2.4.9012.zip(r-4.6)BioMonTools_1.2.4.9012.zip(r-4.5)
BioMonTools_1.2.4.9012.tgz(r-4.6-any)BioMonTools_1.2.4.9012.tgz(r-4.5-any)
BioMonTools_1.2.4.9012.tar.gz(r-4.6-any)BioMonTools_1.2.4.9012.tar.gz(r-4.5-any)
BioMonTools_1.2.4.9012.tgz(r-4.5-emscripten)
BioMonTools.pdf |BioMonTools.html✨
BioMonTools/json (API)
NEWS
| # Install 'BioMonTools' in R: |
| install.packages('BioMonTools', repos = c('https://leppott.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/leppott/biomontools/issues
- TaxaMaster_Ben_BCG_PacNW - TaxaMaster_Ben_BCG_PacNW
- data_Taxa_MA - Estuary taxa data
- data_benthos_MBSS - Benthic macroinvertebrate taxa data; MBSS
- data_benthos_PacNW - Benthic macroinvertebrate taxa data; Pacific Northwest
- data_bio2rarify - Rarify example data
- data_coral_bcg_metric_dev - Coral taxa data; Florida BCG.
- data_coral_bcg_metric_qc - Coral metric value data; Florida BCG.
- data_diatom_mmi_dev - Diatom taxa data; Indiana DEM
- data_diatom_mmi_qc - Diatom metric value data; Indiana DEM
- data_fish_MBSS - Fish data, MBSS
- data_metval_scmb_ibi - Data_metval_scmb_ibi
- data_mmi_dev - Metric data for metric stats for mmi development
- data_mmi_dev_small - Metric data for metric stats for mmi development
benthicbioassessmentbiomonitoringfishmacorinvertebratesmetricperiphytonrbp
Last updated from:830a3ec271. Checks:7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 173 | ||
| source / vignettes | OK | 258 | ||
| linux-release-x86_64 | ERROR | 194 | ||
| macos-devel-arm64 | ERROR | 149 | ||
| macos-release-arm64 | ERROR | 189 | ||
| windows-devel | ERROR | 143 | ||
| windows-release | ERROR | 154 | ||
| windows-oldrel | ERROR | 170 | ||
| wasm-release | OK | 133 |
Exports:assign_IndexClassMapTaxaObsmarkExcludedmetric.scoresmetric.statsmetric.stats2metric.valuesmetric.values.algaemetric.values.bugsmetric.values.coralmetric.values.fishmetvalgrpxlqc_taxaqc_taxa_match_officialqc_taxa_values_ffgqc_taxa_values_habitqc_taxa_values_tolvalqc.checksrarifytaxa_translate
Dependencies:clicpp11dplyrgenericsgluelifecyclemagrittrmapspillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr
Vignette, Adding a New Index
Rendered fromvignette_NewIndex.Rmdusingknitr::rmarkdownon Mar 20 2026.Last update: 2023-08-11
Started: 2023-03-06
Vignette, BioMonTools
Rendered fromvignette_BioMonTools.Rmdusingknitr::rmarkdownon Mar 20 2026.Last update: 2025-10-03
Started: 2018-11-20
Taxa Maps
Rendered fromvignette_MapTaxaObs.Rmdusingknitr::rmarkdownon Mar 20 2026.Last update: 2025-09-22
Started: 2018-11-26
