Package: BCBCSF 1.0-2
BCBCSF: Bias-Corrected Bayesian Classification with Selected Features
Fully Bayesian Classification with a subset of high-dimensional features, such as expression levels of genes. The data are modeled with a hierarchical Bayesian models using heavy-tailed t distributions as priors. When a large number of features are available, one may like to select only a subset of features to use, typically those features strongly correlated with the response in training cases. Such a feature selection procedure is however invalid since the relationship between the response and the features has be exaggerated by feature selection. This package provides a way to avoid this bias and yield better-calibrated predictions for future cases when one uses F-statistic to select features.
Authors:
BCBCSF_1.0-2.tar.gz
BCBCSF_1.0-2.zip(r-4.6)BCBCSF_1.0-2.zip(r-4.5)
BCBCSF_1.0-2.tgz(r-4.6-x86_64)BCBCSF_1.0-2.tgz(r-4.6-arm64)BCBCSF_1.0-2.tgz(r-4.5-x86_64)BCBCSF_1.0-2.tgz(r-4.5-arm64)
BCBCSF_1.0-2.tar.gz(r-4.6-arm64)BCBCSF_1.0-2.tar.gz(r-4.6-x86_64)BCBCSF_1.0-2.tar.gz(r-4.5-arm64)BCBCSF_1.0-2.tar.gz(r-4.5-x86_64)
BCBCSF_1.0-2.tgz(r-4.5-emscripten)
BCBCSF.pdf |BCBCSF.html✨
BCBCSF/json (API)
| # Install 'BCBCSF' in R: |
| install.packages('BCBCSF', repos = c('https://longhaisk.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:050f57d809. Checks:12 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 102 | ||
| linux-devel-x86_64 | OK | 118 | ||
| source / vignettes | OK | 141 | ||
| linux-release-arm64 | OK | 97 | ||
| linux-release-x86_64 | OK | 100 | ||
| macos-devel-arm64 | OK | 134 | ||
| macos-devel-x86_64 | OK | 289 | ||
| macos-release-arm64 | OK | 143 | ||
| macos-release-x86_64 | OK | 291 | ||
| windows-devel | OK | 123 | ||
| windows-release | OK | 67 | ||
| wasm-release | OK | 103 |
Exports:bcbcsf_fitpredbcbcsf_plotsumfitbcbcsf_predbcbcsf_sumfitcross_vldeval_predreload_fit_bcbcsf
Dependencies:abind
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Examples of fitting models, predicting class labels, evaluating prediction, and analyzing fitting results | bcbcsfexamples |
| Functions for fitting models with MCMC, predicting class labels of test cases, and finding predictive probabilities with cross-validation | bcbcsf_fitpred bcbcsf_pred cross_vld |
| A function for evaluating arrays of predictive probabilities with the true class labels of test cases | eval_pred |
| Functions for analyzing and visualizing a BCBCSF fitting result | bcbcsf_plotsumfit bcbcsf_sumfit reload_fit_bcbcsf |
| Lymphoma Microarray Data | lymph.X lymph.y lymphoma |
