Package: neat 1.2.4

neat: Efficient Network Enrichment Analysis Test

Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in Signorelli et al. (2016, <doi:10.1186/s12859-016-1203-6>).

Authors:Mirko Signorelli [aut, cre, cph], Veronica Vinciotti [ctb], Ernst Wit [ctb]

neat_1.2.4.tar.gz
neat_1.2.4.zip(r-4.7)neat_1.2.4.zip(r-4.6)neat_1.2.4.zip(r-4.5)
neat_1.2.4.tgz(r-4.6-any)neat_1.2.4.tgz(r-4.5-any)
neat_1.2.4.tar.gz(r-4.6-any)neat_1.2.4.tar.gz(r-4.5-any)
neat_1.2.4.tgz(r-4.5-emscripten)
neat.pdf |neat.html✨
neat/json (API)
NEWS

# Install 'neat' in R:

install.packages('neat', repos = c('https://m-signo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mirkosignorelli/r/issues

Datasets:

yeast - List collecting various yeast data

On CRAN:

2.36 score 23 scripts 321 downloads 2 exports 11 dependencies

Last updated from:26dfe0e1d6. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	120
source / vignettes	OK	207
linux-release-x86_64	OK	112
macos-release-arm64	OK	163
macos-oldrel-arm64	OK	269
windows-devel	OK	77
windows-release	OK	61
windows-oldrel	OK	69
wasm-release	OK	118

Exports:neat networkmatrix

Dependencies:cli cpp11 glue igraph lattice lifecycle magrittr Matrix pkgconfig rlang vctrs

An introduction to the R package neat

Mirko Signorelli

Rendered fromneat.Rmdusingknitr::rmarkdownon Apr 02 2026.

Last update: 2024-02-02
Started: 2016-08-06

Citation

Readme and manuals

Help Manual

Help page	Topics
neat	neat-package
Performs neat for lists of gene sets	neat neatc pvalue
Creates a network matrix for 'neat'	networkmatrix
Plot method of 'neat'	plot.neat
Print method of 'neat'	print.neat
Summary method of 'neat'	summary.neat
List collecting various yeast data (see 'description')	yeast