data_5C46 # _model_server_result.job_id P-KLon5Dr4V79GKeKBNkAQ _model_server_result.datetime_utc '2026-10-09 06:19:47' _model_server_result.server_version 0.9.13 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5c46 # _entry.id 5C46 # _exptl.entry_id 5C46 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60683.84 _entity.id 1 _entity.src_method man _entity.type polymer _entity.pdbx_description 'Phosphatidylinositol 4-kinase beta' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation S294A _entity.pdbx_fragment ? _entity.pdbx_ec 2.7.1.67 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5C46 _cell.length_a 48.94 _cell.length_b 97.95 _cell.length_c 190.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5C46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 1 _struct_asym.id A _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _entity_poly.entity_id 1 _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.type polypeptide(L) _entity_poly.pdbx_strand_id E _entity_poly.pdbx_seq_one_letter_code ;GSHMQNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEDVDFYLPQLLNMYIHMDEDVGDAIKP YIVHRCRQSINFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPANLKRTAANPKVENEDEPVRLAPEREFIK SLMAIGKRLATLPTKEQKTQRLISELSLLNHKLPARVWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECENFD TTSVPARIPENRRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPNWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQER VPLWIKPYKILVISADSGMIEPVVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEAFLSAQRNFVQSCAGYCLVCYLLQVK DRHNGNILLDAEGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGLDGDMFNYYKMLMLQGLIAARKHMDKVVQI VEIMQQGSQLPCFHGSSTIRNLKERFHMSMTEEQLQLLVEQMVDGSMRS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMQNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEDVDFYLPQLLNMYIHMDEDVGDAIKP YIVHRCRQSINFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPANLKRTAANPKVENEDEPVRLAPEREFIK SLMAIGKRLATLPTKEQKTQRLISELSLLNHKLPARVWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECENFD TTSVPARIPENRRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPNWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQER VPLWIKPYKILVISADSGMIEPVVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEAFLSAQRNFVQSCAGYCLVCYLLQVK DRHNGNILLDAEGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGLDGDMFNYYKMLMLQGLIAARKHMDKVVQI VEIMQQGSQLPCFHGSSTIRNLKERFHMSMTEEQLQLLVEQMVDGSMRS ; _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.hetero _entity_poly_seq.mon_id _entity_poly_seq.num 1 n GLY 1 1 n SER 2 1 n HIS 3 1 n MET 4 1 n GLN 5 1 n ASN 6 1 n ASN 7 1 n SER 8 1 n ALA 9 1 n LYS 10 1 n GLN 11 1 n SER 12 1 n TRP 13 1 n LEU 14 1 n LEU 15 1 n ARG 16 1 n LEU 17 1 n PHE 18 1 n GLU 19 1 n SER 20 1 n LYS 21 1 n LEU 22 1 n PHE 23 1 n ASP 24 1 n ILE 25 1 n SER 26 1 n MET 27 1 n ALA 28 1 n ILE 29 1 n SER 30 1 n TYR 31 1 n LEU 32 1 n TYR 33 1 n ASN 34 1 n SER 35 1 n LYS 36 1 n GLU 37 1 n PRO 38 1 n GLY 39 1 n VAL 40 1 n GLN 41 1 n ALA 42 1 n TYR 43 1 n ILE 44 1 n GLY 45 1 n ASN 46 1 n ARG 47 1 n LEU 48 1 n PHE 49 1 n CYS 50 1 n PHE 51 1 n ARG 52 1 n ASN 53 1 n GLU 54 1 n ASP 55 1 n VAL 56 1 n ASP 57 1 n PHE 58 1 n TYR 59 1 n LEU 60 1 n PRO 61 1 n GLN 62 1 n LEU 63 1 n LEU 64 1 n ASN 65 1 n MET 66 1 n TYR 67 1 n ILE 68 1 n HIS 69 1 n MET 70 1 n ASP 71 1 n GLU 72 1 n ASP 73 1 n VAL 74 1 n GLY 75 1 n ASP 76 1 n ALA 77 1 n ILE 78 1 n LYS 79 1 n PRO 80 1 n TYR 81 1 n ILE 82 1 n VAL 83 1 n HIS 84 1 n ARG 85 1 n CYS 86 1 n ARG 87 1 n GLN 88 1 n SER 89 1 n ILE 90 1 n ASN 91 1 n PHE 92 1 n SER 93 1 n LEU 94 1 n GLN 95 1 n CYS 96 1 n ALA 97 1 n LEU 98 1 n LEU 99 1 n LEU 100 1 n GLY 101 1 n ALA 102 1 n TYR 103 1 n SER 104 1 n SER 105 1 n ASP 106 1 n MET 107 1 n HIS 108 1 n ILE 109 1 n SER 110 1 n THR 111 1 n GLN 112 1 n ARG 113 1 n HIS 114 1 n SER 115 1 n ARG 116 1 n GLY 117 1 n THR 118 1 n LYS 119 1 n LEU 120 1 n ARG 121 1 n LYS 122 1 n LEU 123 1 n ILE 124 1 n LEU 125 1 n SER 126 1 n ASP 127 1 n GLU 128 1 n LEU 129 1 n LYS 130 1 n PRO 131 1 n ALA 132 1 n ASN 133 1 n LEU 134 1 n LYS 135 1 n ARG 136 1 n THR 137 1 n ALA 138 1 n ALA 139 1 n ASN 140 1 n PRO 141 1 n LYS 142 1 n VAL 143 1 n GLU 144 1 n ASN 145 1 n GLU 146 1 n ASP 147 1 n GLU 148 1 n PRO 149 1 n VAL 150 1 n ARG 151 1 n LEU 152 1 n ALA 153 1 n PRO 154 1 n GLU 155 1 n ARG 156 1 n GLU 157 1 n PHE 158 1 n ILE 159 1 n LYS 160 1 n SER 161 1 n LEU 162 1 n MET 163 1 n ALA 164 1 n ILE 165 1 n GLY 166 1 n LYS 167 1 n ARG 168 1 n LEU 169 1 n ALA 170 1 n THR 171 1 n LEU 172 1 n PRO 173 1 n THR 174 1 n LYS 175 1 n GLU 176 1 n GLN 177 1 n LYS 178 1 n THR 179 1 n GLN 180 1 n ARG 181 1 n LEU 182 1 n ILE 183 1 n SER 184 1 n GLU 185 1 n LEU 186 1 n SER 187 1 n LEU 188 1 n LEU 189 1 n ASN 190 1 n HIS 191 1 n LYS 192 1 n LEU 193 1 n PRO 194 1 n ALA 195 1 n ARG 196 1 n VAL 197 1 n TRP 198 1 n LEU 199 1 n PRO 200 1 n THR 201 1 n ALA 202 1 n GLY 203 1 n PHE 204 1 n ASP 205 1 n HIS 206 1 n HIS 207 1 n VAL 208 1 n VAL 209 1 n ARG 210 1 n VAL 211 1 n PRO 212 1 n HIS 213 1 n THR 214 1 n GLN 215 1 n ALA 216 1 n VAL 217 1 n VAL 218 1 n LEU 219 1 n ASN 220 1 n SER 221 1 n LYS 222 1 n ASP 223 1 n LYS 224 1 n ALA 225 1 n PRO 226 1 n TYR 227 1 n LEU 228 1 n ILE 229 1 n TYR 230 1 n VAL 231 1 n GLU 232 1 n VAL 233 1 n LEU 234 1 n GLU 235 1 n CYS 236 1 n GLU 237 1 n ASN 238 1 n PHE 239 1 n ASP 240 1 n THR 241 1 n THR 242 1 n SER 243 1 n VAL 244 1 n PRO 245 1 n ALA 246 1 n ARG 247 1 n ILE 248 1 n PRO 249 1 n GLU 250 1 n ASN 251 1 n ARG 252 1 n ARG 253 1 n ASP 254 1 n PRO 255 1 n GLU 256 1 n ASP 257 1 n PRO 258 1 n SER 259 1 n ALA 260 1 n VAL 261 1 n ALA 262 1 n LEU 263 1 n LYS 264 1 n GLU 265 1 n PRO 266 1 n TRP 267 1 n GLN 268 1 n GLU 269 1 n LYS 270 1 n VAL 271 1 n ARG 272 1 n ARG 273 1 n ILE 274 1 n ARG 275 1 n GLU 276 1 n GLY 277 1 n SER 278 1 n PRO 279 1 n TYR 280 1 n GLY 281 1 n HIS 282 1 n LEU 283 1 n PRO 284 1 n ASN 285 1 n TRP 286 1 n ARG 287 1 n LEU 288 1 n LEU 289 1 n SER 290 1 n VAL 291 1 n ILE 292 1 n VAL 293 1 n LYS 294 1 n CYS 295 1 n GLY 296 1 n ASP 297 1 n ASP 298 1 n LEU 299 1 n ARG 300 1 n GLN 301 1 n GLU 302 1 n LEU 303 1 n LEU 304 1 n ALA 305 1 n PHE 306 1 n GLN 307 1 n VAL 308 1 n LEU 309 1 n LYS 310 1 n GLN 311 1 n LEU 312 1 n GLN 313 1 n SER 314 1 n ILE 315 1 n TRP 316 1 n GLU 317 1 n GLN 318 1 n GLU 319 1 n ARG 320 1 n VAL 321 1 n PRO 322 1 n LEU 323 1 n TRP 324 1 n ILE 325 1 n LYS 326 1 n PRO 327 1 n TYR 328 1 n LYS 329 1 n ILE 330 1 n LEU 331 1 n VAL 332 1 n ILE 333 1 n SER 334 1 n ALA 335 1 n ASP 336 1 n SER 337 1 n GLY 338 1 n MET 339 1 n ILE 340 1 n GLU 341 1 n PRO 342 1 n VAL 343 1 n VAL 344 1 n ASN 345 1 n ALA 346 1 n VAL 347 1 n SER 348 1 n ILE 349 1 n HIS 350 1 n GLN 351 1 n VAL 352 1 n LYS 353 1 n LYS 354 1 n GLN 355 1 n SER 356 1 n GLN 357 1 n LEU 358 1 n SER 359 1 n LEU 360 1 n LEU 361 1 n ASP 362 1 n TYR 363 1 n PHE 364 1 n LEU 365 1 n GLN 366 1 n GLU 367 1 n HIS 368 1 n GLY 369 1 n SER 370 1 n TYR 371 1 n THR 372 1 n THR 373 1 n GLU 374 1 n ALA 375 1 n PHE 376 1 n LEU 377 1 n SER 378 1 n ALA 379 1 n GLN 380 1 n ARG 381 1 n ASN 382 1 n PHE 383 1 n VAL 384 1 n GLN 385 1 n SER 386 1 n CYS 387 1 n ALA 388 1 n GLY 389 1 n TYR 390 1 n CYS 391 1 n LEU 392 1 n VAL 393 1 n CYS 394 1 n TYR 395 1 n LEU 396 1 n LEU 397 1 n GLN 398 1 n VAL 399 1 n LYS 400 1 n ASP 401 1 n ARG 402 1 n HIS 403 1 n ASN 404 1 n GLY 405 1 n ASN 406 1 n ILE 407 1 n LEU 408 1 n LEU 409 1 n ASP 410 1 n ALA 411 1 n GLU 412 1 n GLY 413 1 n HIS 414 1 n ILE 415 1 n ILE 416 1 n HIS 417 1 n ILE 418 1 n ASP 419 1 n PHE 420 1 n GLY 421 1 n PHE 422 1 n ILE 423 1 n LEU 424 1 n SER 425 1 n SER 426 1 n SER 427 1 n PRO 428 1 n ARG 429 1 n ASN 430 1 n LEU 431 1 n GLY 432 1 n PHE 433 1 n GLU 434 1 n THR 435 1 n SER 436 1 n ALA 437 1 n PHE 438 1 n LYS 439 1 n LEU 440 1 n THR 441 1 n THR 442 1 n GLU 443 1 n PHE 444 1 n VAL 445 1 n ASP 446 1 n VAL 447 1 n MET 448 1 n GLY 449 1 n GLY 450 1 n LEU 451 1 n ASP 452 1 n GLY 453 1 n ASP 454 1 n MET 455 1 n PHE 456 1 n ASN 457 1 n TYR 458 1 n TYR 459 1 n LYS 460 1 n MET 461 1 n LEU 462 1 n MET 463 1 n LEU 464 1 n GLN 465 1 n GLY 466 1 n LEU 467 1 n ILE 468 1 n ALA 469 1 n ALA 470 1 n ARG 471 1 n LYS 472 1 n HIS 473 1 n MET 474 1 n ASP 475 1 n LYS 476 1 n VAL 477 1 n VAL 478 1 n GLN 479 1 n ILE 480 1 n VAL 481 1 n GLU 482 1 n ILE 483 1 n MET 484 1 n GLN 485 1 n GLN 486 1 n GLY 487 1 n SER 488 1 n GLN 489 1 n LEU 490 1 n PRO 491 1 n CYS 492 1 n PHE 493 1 n HIS 494 1 n GLY 495 1 n SER 496 1 n SER 497 1 n THR 498 1 n ILE 499 1 n ARG 500 1 n ASN 501 1 n LEU 502 1 n LYS 503 1 n GLU 504 1 n ARG 505 1 n PHE 506 1 n HIS 507 1 n MET 508 1 n SER 509 1 n MET 510 1 n THR 511 1 n GLU 512 1 n GLU 513 1 n GLN 514 1 n LEU 515 1 n GLN 516 1 n LEU 517 1 n LEU 518 1 n VAL 519 1 n GLU 520 1 n GLN 521 1 n MET 522 1 n VAL 523 1 n ASP 524 1 n GLY 525 1 n SER 526 1 n MET 527 1 n ARG 528 1 n SER 529 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 28 F SER 25 1_555 F MG MG . F MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc2 B OG1 THR 46 F THR 43 1_555 F MG MG . F MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 E O3G GSP . F GSP 2000 1_555 F MG MG . F MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 E O2B GSP . F GSP 2000 1_555 F MG MG . F MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id SER _chem_comp.mon_nstd_flag y _chem_comp.name SERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SER sing 327 n n N H SER sing 328 n n N H2 SER sing 329 n n CA C SER sing 330 n n CA CB SER sing 331 n n CA HA SER sing 332 n n C O SER doub 333 n n C OXT SER sing 334 n n CB OG SER sing 335 n n CB HB2 SER sing 336 n n CB HB3 SER sing 337 n n OG HG SER sing 338 n n OXT HXT SER sing 339 n n # _atom_sites.entry_id 5C46 _atom_sites.fract_transf_matrix[1][1] 0.020433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 E 1 801 2 SO4 SO4 ? D 3 SO4 E 1 802 3 SO4 SO4 ? E 4 GSP F 1 2000 2000 GSP GSP ? F 5 MG F 1 2001 2001 MG MG ? G 6 HOH E 1 901 1 HOH HOH ? G 6 HOH E 2 902 4 HOH HOH ? G 6 HOH E 3 903 3 HOH HOH ? H 6 HOH F 1 2101 5 HOH HOH ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num ATOM 1 N N SER 12 . . A 1 -16.602 19.685 12.99 1 105.59 ? N SER 128 E 1 ATOM 2 C CA SER 12 . . A 1 -17.921 19.188 12.616 1 104.75 ? CA SER 128 E 1 ATOM 3 C C SER 12 . . A 1 -18.395 19.807 11.308 1 105.05 ? C SER 128 E 1 ATOM 4 O O SER 12 . . A 1 -19.427 19.413 10.767 1 104.55 ? O SER 128 E 1 ATOM 5 C CB SER 12 . . A 1 -18.937 19.475 13.722 1 103.25 ? CB SER 128 E 1 ATOM 6 O OG SER 12 . . A 1 -19.163 20.868 13.848 1 102.4 ? OG SER 128 E 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 197 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #