Package: OrgHeatmap 0.3.2
OrgHeatmap: Visualization Tool for Numerical Data on Human/Mouse Organs and Organelles
A tool for visualizing numerical data (e.g., gene expression, protein abundance) on predefined anatomical maps of human/mouse organs and subcellular organelles. It supports customization of color schemes, filtering by organ systems (for organisms) or organelle types, and generation of optional bar charts for quantitative comparison. The package integrates coordinate data for organs and organelles to plot anatomical/subcellular contours, mapping data values to specific structures for intuitive visualization of biological data distribution.The underlying method was described in the preprint by Zhou et al. (2022) <doi:10.1101/2022.09.07.506938>.
Authors:
OrgHeatmap_0.3.2.tar.gz
OrgHeatmap_0.3.2.zip(r-4.7)OrgHeatmap_0.3.2.zip(r-4.6)OrgHeatmap_0.3.2.zip(r-4.5)
OrgHeatmap_0.3.2.tgz(r-4.6-any)OrgHeatmap_0.3.2.tgz(r-4.5-any)
OrgHeatmap_0.3.2.tar.gz(r-4.6-any)OrgHeatmap_0.3.2.tar.gz(r-4.5-any)
OrgHeatmap_0.3.2.tgz(r-4.5-emscripten)
OrgHeatmap.pdf |OrgHeatmap.html✨
OrgHeatmap/json (API)
NEWS
| # Install 'OrgHeatmap' in R: |
| install.packages('OrgHeatmap', repos = c('https://qiruishen439.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/qiruishen439/orgheatmap/issues
- human_bodycontour - Human body contour coordinate data
- human_organ_coord - Human organ coordinate data
- human_organ_systems - Human Organ-system mapping data
- mouse_bodycontour - Mouse body contour coordinate data
- mouse_organ_coord - Mouse organ coordinate data
- mouse_organ_systems - Mouse Organ-system mapping data
- organelle_bodycontour - Organelle Body Contour Data
- organelle_organ_coord - Organelle Organ Coordinate Data
Last updated from:043958166c. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 183 | ||
| source / vignettes | OK | 202 | ||
| linux-release-x86_64 | OK | 181 | ||
| macos-release-arm64 | OK | 204 | ||
| macos-oldrel-arm64 | OK | 182 | ||
| windows-devel | OK | 158 | ||
| windows-release | OK | 140 | ||
| windows-oldrel | OK | 153 | ||
| wasm-release | OK | 189 |
Exports:human_organ_systemsmouse_organ_systemsOrgHeatmap
Dependencies:classclassIntclicpp11data.tableDBIdplyre1071farvergenericsggplot2ggpolypathgluegridExtragtableisobandKernSmoothlabelinglifecyclemagrittrMASSpatchworkpillarpkgconfigproxypurrrR6RColorBrewerRcpprlangs2S7scalessfstringdiststringistringrtibbletidyselectunitsutf8vctrsviridisviridisLitewithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Human body contour coordinate data | human_bodycontour |
| Human organ coordinate data | human_organ_coord |
| Human Organ-system mapping data | human_organ_systems |
| Mouse body contour coordinate data | mouse_bodycontour |
| Mouse organ coordinate data | mouse_organ_coord |
| Mouse Organ-system mapping data | mouse_organ_systems |
| Organelle Body Contour Data | organelle_bodycontour |
| Organelle Organ Coordinate Data | organelle_organ_coord |
| Visualization Tool for Human, Mouse and Organelle Data | OrgHeatmap |
