Package: OrgHeatmap 0.3.2

OrgHeatmap: Visualization Tool for Numerical Data on Human/Mouse Organs and Organelles

A tool for visualizing numerical data (e.g., gene expression, protein abundance) on predefined anatomical maps of human/mouse organs and subcellular organelles. It supports customization of color schemes, filtering by organ systems (for organisms) or organelle types, and generation of optional bar charts for quantitative comparison. The package integrates coordinate data for organs and organelles to plot anatomical/subcellular contours, mapping data values to specific structures for intuitive visualization of biological data distribution.The underlying method was described in the preprint by Zhou et al. (2022) <doi:10.1101/2022.09.07.506938>.

Authors:Qirui Shen [aut, cre]

OrgHeatmap_0.3.2.tar.gz
OrgHeatmap_0.3.2.zip(r-4.7)OrgHeatmap_0.3.2.zip(r-4.6)OrgHeatmap_0.3.2.zip(r-4.5)
OrgHeatmap_0.3.2.tgz(r-4.6-any)OrgHeatmap_0.3.2.tgz(r-4.5-any)
OrgHeatmap_0.3.2.tar.gz(r-4.6-any)OrgHeatmap_0.3.2.tar.gz(r-4.5-any)
OrgHeatmap_0.3.2.tgz(r-4.5-emscripten)
OrgHeatmap.pdf |OrgHeatmap.html
OrgHeatmap/json (API)
NEWS

# Install 'OrgHeatmap' in R:
install.packages('OrgHeatmap', repos = c('https://qiruishen439.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/qiruishen439/orgheatmap/issues

Datasets:

On CRAN:

Conda:

4.40 score 604 downloads 3 exports 46 dependencies

Last updated from:043958166c. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK183
source / vignettesOK202
linux-release-x86_64OK181
macos-release-arm64OK204
macos-oldrel-arm64OK182
windows-develOK158
windows-releaseOK140
windows-oldrelOK153
wasm-releaseOK189

Exports:human_organ_systemsmouse_organ_systemsOrgHeatmap

Dependencies:classclassIntclicpp11data.tableDBIdplyre1071farvergenericsggplot2ggpolypathgluegridExtragtableisobandKernSmoothlabelinglifecyclemagrittrMASSpatchworkpillarpkgconfigproxypurrrR6RColorBrewerRcpprlangs2S7scalessfstringdiststringistringrtibbletidyselectunitsutf8vctrsviridisviridisLitewithrwk

OrgHeatmap Tutorial

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Apr 15 2026.

Last update: 2025-12-04
Started: 2025-09-05