Package: NicheBarcoding 1.8

Cai-qing YANG

NicheBarcoding: Niche-model-Based Species Identification

Species Identification using DNA Barcodes Integrated with Environmental Niche Models.

Authors:Cai-qing YANG [aut, cre], Ying WANG [aut], Xin-hai LI [aut], Jing LI [aut], Bing YANG [aut], Michael christopher ORR [aut], Ai-bing ZHANG [aut]

NicheBarcoding_1.8.tar.gz
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NicheBarcoding_1.8.tgz(r-4.6-any)NicheBarcoding_1.8.tgz(r-4.5-any)
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NicheBarcoding_1.8.tgz(r-4.5-emscripten)
NicheBarcoding.pdf |NicheBarcoding.html✨
NicheBarcoding/json (API)

# Install 'NicheBarcoding' in R:
install.packages('NicheBarcoding', repos = c('https://yangcq-ivy.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yangcq-ivy/nichebarcoding/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT
Datasets:
  • bak.vir - Bak.vir data set, a class of matrix.
  • en.vir - En.vir data set, a class of RasterBrick.
  • LappetMoths - LappetMoths data set, a list of 8 data frames.

On CRAN:

Conda:

openjdk

4.18 score 1 stars 7 scripts 271 downloads 9 exports 24 dependencies

Last updated from:40c0d6c43f. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR354
source / vignettesOK232
linux-release-x86_64ERROR362
macos-release-arm64ERROR313
macos-oldrel-arm64ERROR406
windows-develERROR531
windows-releaseERROR364
windows-oldrelERROR405
wasm-releaseOK165

Exports:extractSpeInfomonophyly.propNBSINBSI2niche.Model.Buildniche.PCApseudo.absent.pointspseudo.present.pointsspe.mantel.test

Dependencies:apeclassclusterdigestdismoe1071latticemapsMASSMatrixmgcvnlmepegaspermutepROCproxyrandomForestrasterRcpprJavaspspiderterravegan

Niche-model-Based Species Identification

Rendered fromhow-to-do-stuff-NBSI.Rmdusingknitr::rmarkdownon Apr 11 2026.

Last update: 2024-08-08
Started: 2021-12-17

NicheBaroding species identification

Rendered fromhow_it_works.Rmdusingknitr::rmarkdownon Apr 11 2026.

Last update: 2024-08-08
Started: 2021-12-17

NicheBaroding Species Identification

Rendered fromNBSI.Rmdusingknitr::rmarkdownon Apr 11 2026.

Last update: 2024-08-08
Started: 2021-12-17